VitiVar - Compendium of genes and variants associated with vitiligo
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View genomic variant #0000001150
Chromosome
6
Allele
Unknown
Affects function (reported)
Not classified
Affects function (concluded)
Not classified
DNA change
g.31543031G>A
DB-ID
chr6_000014
Gene
TNFA
dbSNP ID
rs1800629
Risk allele
-;A;A;A;A;A;A
Population
INDIAN; SAUDI; IRANIAN; NA; MEXICAN; META-ANALSIS; META-ANALSIS; META-ANALSIS
Pubmed Reference
Laddha et al.(2012)
;
Al et al.(2013)
;
Namain et al.(2008)
;
Aydıngöz et al.(2015)
;
Salinas et al.(2015)
;
Wu et al.(2015)
;
Lee et al.(2015)
;
Nie et al.(2015)
IGV
0.05888
1000G
0.0902556
gnomAD
0.1462
ExAC
0.1616
GTEx
View in GTEx
Variant remarks
EXPRESSION, CANDIDATE
Average frequency (large NGS studies)
0.14142
View details
Owner
IGIB
Variant on transcripts
No variants on transcripts found for this variant!
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